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Status
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Public on Jul 27, 2019
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Title
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RNA-seq mouse donor T-cells 7 days post HSCT
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Organism
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Mus musculus
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Experiment type
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Expression profiling by high throughput sequencing
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Summary
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The overal goal was to characterize the differential expression of protein-coding genes and lncRNAs in donor T-cells 7 days after experimental HSCT.
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Overall design
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Independent biologic triplicate donor T-cells were harvested for RNA-seq from a pool of 2-4 mouse recipients detailed below 7 days after allogeneic or syngeneic HSCT or from healthy control, non-transplanted animals.
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Contributor(s)
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Reddy P
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Peltier DC
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Sun Y
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Tagett R
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Citation(s)
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36043052
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Submission date
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Jul 26, 2019
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Last update date
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Sep 15, 2022
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Contact name
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Bioinformatics Core
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E-mail(s)
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bioinformatics@umich.edu
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Organization name
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University of Michigan
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Street address
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BRCF Bioinformatics Core, 2800 Plymouth Rd
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City
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Ann Arbor
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State/province
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Mi
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ZIP/Postal code
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48109-2800
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Country
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USA
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Platforms (1)
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GPL21103
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Illumina HiSeq 4000 (Mus musculus)
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Samples (9)
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GSM3983012
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Naive sorted LiveDead Near IR-,CD3+,CD45.2+ C57BL/6 Splenic T-cells-1
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GSM3983013
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Naive sorted LiveDead Near IR-,CD3+,CD45.2+ C57BL/6 Splenic T-cells-2
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GSM3983014
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Naive sorted LiveDead Near IR-,CD3+,CD45.2+ C57BL/6 Splenic T-cells-3
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GSM3983015
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Donor sorted Live,CD3+,CD45.2+ Splenic T-cells 7 days post syngeneic HSCT -1
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GSM3983016
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Donor sorted Live,CD3+,CD45.2+ Splenic T-cells 7 days post syngeneic HSCT -2
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GSM3983017
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Donor sorted Live,CD3+,CD45.2+ Splenic T-cells 7 days post syngeneic HSCT -3
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GSM3983018
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Donor sorted Live,CD3+,CD45.2+ Splenic T-cells 7 days post allogeneic HSCT -1
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GSM3983019
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Donor sorted Live,CD3+,CD45.2+ Splenic T-cells 7 days post allogeneic HSCT -2
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GSM3983020
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Donor sorted Live,CD3+,CD45.2+ Splenic T-cells 7 days post allogeneic HSCT -3
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Relations
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BioProject
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PRJNA556902
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SRA
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SRP216539
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Supplementary file
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Size
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Download
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File type/resource
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GSE134975_raw_counts.txt.gz
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473.0 Kb
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(ftp)
(http)
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TXT
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SRA Run Selector
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Raw data are available in SRA
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Processed data are available on Series record
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